2017/03/21 Maximum queued jobs per user set to 1000 for both clusters.

2016/12/13 **[[https://github.com/PacificBiosciences/GenomicConsensus|PacBio GenomicConsensus]]** and multiple prerequisites/components ''quiver,ccs,blasr,bax2bam,bam2bax,pbbams,samtools'' are installed on trestles. Use ''module load gcc/4.9.1 mkl/16.0.1 python/2.7.3 pitchfork/5.3''.

2016/12/06  hpcwiki article [[learning_resources|learning_resources]] (credit and non-credit classes and reference material) installed.

2/016/09/22 **[[http://www.ibm.com/developerworks/downloads/im/mpi/|IBM Platform MPI Community Edition]]** 9.1.2 (formerly HP MPI) installed on razor. Use ''module platform_mpi/9.1.2''.  Either ''impi'' or ''platform_mpi'' may be used with ''ansys''.  Platform MPI, like Intel MPI, is not tied to a compiler.

2016/09/22  hpcwiki articles [[modules|modules]] (topics environment modules/.bashrc) updated, and a new article [[MPI|MPI]] (topics MPI types/MPI examples/Hybrid MPI-threads/HPL) split off and heavily updated.

2016/09/19 Update: razor frontend file system problems fixed. (updated from: Frontend razor-l3 has unmounted file systems and is causing login problems on razor. If it hangs on login, ctrl-c and try login again to randomly get another frontend.  Rebooting it soon.)

2016/09/15 **[[http://www.mathworks.com/help/relnotes/index.html|matlab R2016b]]** installed on Razor.  Use ''module matlab/r2016b'' and, for mex, ''gcc/4.9.1''. 

2016/09/15 **[[http://search.cpan.org/dist/perl-5.24.0/pod/perldelta.pod|perl 5.24.0]]** installed on Razor. Use ''module perl/5.24.0'' and, for compiling or C links, ''gcc/4.9.1'' . ''BioPerl'' and dependencies are installed as modules.  We will be installing new module requests on 5.24.0 as default 5.10.1 has some issues. After testing 5.24.0 will be copied to Trestles.

2016/09/13 **[[http://deeplearning.net/software/theano/|theano]]** and **[[https://developer.nvidia.com/cudnn|cudnn]]** (for Cuda 7.5) installed on Razor. Use on a GPU node:
<code>
$ module load gcc/4.7.2 mkl/16.0.1 mvapich2/2.1 cuda/7.5 python/2.7.11
$ export THEANO_FLAGS='cuda.root=/share/apps/cuda/cuda-7.5,device=gpu,floatX=float32'
$ python
</code>

2016/09/08 **[[http://qboxcode.org/|qbox 1.63.5]]** and **[[http://xerces.apache.org/|xerces 2.8.0]]** installed on Trestles. Use:
<code>
$ module load intel/14.0.3 mkl/14.0.3 openmpi/1.8.8 qbox/1.63.5
$ mpirun -np $NP -machinefile $PBS_NODEFILE -x LD_LIBRARY_PATH qb file.i
</code>

2016/08/21 **[[https://mran.microsoft.com/open/|Microsoft R Open]]** installed on Razor. Use ''module R/MR3.3.1''.  Supposedly "enhanced" but we don't see any advantage over open source ''R/3.3.1'' in limited testing.