torque_slurm_scripts
**This is an old revision of the document!**
Slurm Commands and Scripts
Basic torque/slurm commands are:
| torque | slurm | use |
|---|---|---|
| qsub | sbatch | submit <job file> |
| qsub -I | srun | submit interactive job |
| qstat | squeue | list all queued jobs |
| qstat -u rfeynman | squeue -u rfeynman | list queued jobs for user rfeynman |
| qdel | scancel | cancel <job#> |
| shownodes -l -n;qstat -q | sinfo | node status;list of queues |
A basic slurm script looks like:
#!/bin/bash
#SBATCH --job-name=mpi
#SBATCH --output=zzz.slurm
#SBATCH --partition comp06
#SBATCH --nodes=2
#SBATCH --tasks-per-node=32
#SBATCH --time=6:00:00
cd $SLURM_SUBMIT_DIR
module purge
module load intel/18.0.1 impi/18.0.1 mkl/18.0.1
mpirun -np $SLURM_NTASKS -machinefile /scratch/${SLURM_JOB_ID}/machinefile_${SLURM_JOB_ID} ./mympiexe -inputfile MA4um.mph -outputfile MA4um-output.mph
and a little more complicated with file moving in and out of a scratch area:
pinnacle-l1:$ cat script.slurm
#!/bin/bash
#SBATCH --job-name=espresso
#SBATCH --output=zzz.slurm
#SBATCH --nodes=4
#SBATCH --tasks-per-node=32
$SBATCH --time=00:00:10
#SBATCH --partition comp06
module purge
module load intel/14.0.3 mkl/14.0.3 fftw/3.3.6 impi/5.1.2
cd $SLURM_SUBMIT_DIR
cp *.in *UPF /scratch/$SLURM_JOB_ID
cd /scratch/$SLURM_JOB_ID
mpirun -ppn 16 -hostfile /scratch/${SLURM_JOB_ID}/machinefile_${SLURM_JOB_ID} -genv OMP_NUM_THREADS 4 -genv MKL_NUM_THREADS 4 /share/apps/espresso/qe-6.1-intel-mkl-impi/bin/pw.x -npools 1 <ausurf.in
mv ausurf.log *mix* *wfc* *igk* $SLURM_SUBMIT_DIR/
pinnacle-l1:$
torque_slurm_scripts.1580324380.txt.gz · Last modified: 2020/01/29 18:59 by 127.0.0.1
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