Arkansas High Performace Computing Center [hpcwiki]

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namd [2020/11/20 20:35] – rootnamd [2025/10/15 19:51] (current) – external edit 127.0.0.1
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 This is for multiple-node runs with ''charmrun'' as the distributed component and ''namd2'' on each compute node. We have found most runs are faster with the ''+setcpuaffinity +isomalloc_sync'' options. charmrun ''++ppn'' should match PBS ''ppn=''. This is for multiple-node runs with ''charmrun'' as the distributed component and ''namd2'' on each compute node. We have found most runs are faster with the ''+setcpuaffinity +isomalloc_sync'' options. charmrun ''++ppn'' should match PBS ''ppn=''.
 +
 <code> <code>
 module load namd/2.12  [or 2.11] module load namd/2.12  [or 2.11]
namd.1605904512.txt.gz · Last modified: (external edit)