conda
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conda [2023/12/01 17:08] jpummil |
conda [2024/03/01 19:25] (current) jpummil |
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| < | < | ||
| - | $ module load python/ | + | $ module load python/ |
| </ | </ | ||
| Line 26: | Line 26: | ||
| </ | </ | ||
| - | With everything above resolved, one can now search for relevant software that might be useful for their research...we will actually use an enhanced command in the conda suite called mamba which is significantly faster... | + | With everything above resolved, one can now search for relevant software that might be useful for their research... |
| + | (*The following two commands should be done on a compute node as login nodes no longer have reliable access to the outside world.) | ||
| < | < | ||
| Line 32: | Line 33: | ||
| </ | </ | ||
| - | Once you find the package you wish to install, you would use the following example to perform the task: | + | Once you find the package you wish to install, you would use the following example to perform the following |
| < | < | ||
| conda create -n < | conda create -n < | ||
| </ | </ | ||
| + | One may also use the following command to see what environments are already installed on Pinnacle and activate if suitable: | ||
| + | < | ||
| + | conda env list | ||
| + | </ | ||
| As most users will utilize their new software installs in conjunction with a SLURM job script, below is a quick example of how this process would be implemented: | As most users will utilize their new software installs in conjunction with a SLURM job script, below is a quick example of how this process would be implemented: | ||
| Line 54: | Line 58: | ||
| export OMP_NUM_THREADS=32 | export OMP_NUM_THREADS=32 | ||
| - | module load python/ | + | module load python/ |
| conda activate < | conda activate < | ||
| </ | </ | ||
conda.1701450532.txt.gz · Last modified: 2023/12/01 17:08 by jpummil
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