python_catalog
Python Software Catalog
Not including OpenHPC and other RPM software in /opt and R/python/perl modules
| Conda_3.7.3_environment | description | extra_modules_needed |
|---|---|---|
| base | mkl | |
| R-CARBayes | CARBayes 5.2/r 3.5.1 | |
| aTRAM | atram 2.3.4/bowtie2 2.4.1 | mkl |
| bioconda(for python 2.7) | deprecated:mostly like bionconda3-el7 | mkl |
| bioconda3(for trestles Centos 6) | deprecated:mostly like bionconda3-el7 | mkl |
| bioconda3-el7 | many bioconda modules/orthofinder/blast/cutadapt 3.0/r/bowtie 2.4.2/raxml 8.2.12/raxml-ng 1.0.1 | cuda/mkl/gcc8 |
| boltztrap2 | boltztrap2 20.7.1 | |
| bonito | bonito 0.3.6/megalodon 2.2.10 | cuda/mkl/gcc8 |
| cutadapt | cutadapt 3.2 | |
| flair_env | flair.py/r 3.5.1/raxml | |
| ppa2 | phylophlan 3.0/raxml 8.2.12 | mkl |
| pytorch_gpu | pytorch 1.7.1 | cuda/mkl |
| qiime2-2020.2 | qiime2 2020.2.0/raxml 8.2.12 | |
| rapids-0.16 | rapids/rapids-xgboost 0.16.0 | cuda |
| rapids-gpu | rapids-xgboost 0.15.1 | cuda/mkl |
| sam | aws-sam-cli 1.15.0 | |
| tbprofiler | tb-profiler 2.8.12/bowtie2 | |
| tf1(cpu version) | tensorflow-mkl 1.14.0 | mkl |
| tf_gpu | tensorflow-gpu 1.14.0/openmm 7.5.0 | cuda/mkl/gcc8 |
| theano-env | theano 1.0.4 | mkl |
python_catalog.txt · Last modified: 2021/02/26 16:06 (external edit)
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