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non_bioinformatics_catalog

Non-bioinformatics Software Catalog

Not including OpenHPC and other RPM software in /opt and R/python/perl modules

/share/apps/_Location Module Module Website
opencl/intel_1.2
sunstudio/12.2
qlogicmpi/1.2.7
./arbd/jan18 arbd/jan18 https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=ARBD Oct19beta
./abinit/8.0.8b/intel-14.0.3 mod/version
./abinit/8.0.8b/intel-17.0.4 mod/version
./abinit/8.0.8/intel-impi mod/version
./abinit/8.4.4/intel-17.0.4 mod/version
./abinit/8.6.1/intel-mkl-impi-fftw mod/version
./abinit/abinit-8.6.1-ModifiedOptcell-v2 mod/version
./abinit/abinit-8.6.1-ModifiedOptcell-v2/intel-mkl-impi-fftw mod/version
./abinit/abinit-8.6.1-QuasiFDOccopt-modifiedOptcell mod/version
./abinit/abinit-8.6.1-QuasiFDOccopt-modifiedOptcell/intel-mkl-impi-fftw mod/version
./abinit/9.2.2/intel-mkl-impi-fftw mod/version https://github.com/abinit/abinit 9.2.2
./accumulo/accumulo-2.0.0 mod/version https://accumulo.apache.org/downloads/ 2.0.1
./acml/5.3.1-intel mod/version https://developer.amd.com/amd-aocl/ 2.2-acml-deprecated
./alamode/1.0.2 alamode/1.0.2
./alamode/1.1.0 alamode/1.1.0 https://sourceforge.net/projects/alamode/ 1.1.0
./amber/amber12_tools13 mod/version
./amber/amber12_tools13_gpu mod/version
./amber/amber16_tools17 mod/version
./amber/amber16_tools17/gpu mod/version
./amber/amber16_tools17/intel-impi mod/version https://ambermd.org/GetAmber.php tools20
./ansys/18.2 mod/version
./ansys/19.1 mod/version
./ansys/2019R1 mod/version
./ansys/2020R2 mod/version
./ansys/2109R2 mod/version
./ansys/v201 mod/version commercial
./apache-maven/3.5.0 mod/version https://maven.apache.org/download.cgi see_also_./maven/3.6.3
./apriltag mod/version https://github.com/AprilRobotics/apriltag/releases 3.1.3
./armadillo/9.200.4 mod/version https://sourceforge.net/projects/arma/files/ 10.2.1
./atat mod/version utilities_for_vasp?
./atlas/3.10.3/AMD_6136 mod/version
./atlas/3.10.3/Intel_E5-2650_V2 mod/version
./atlas/3.10.3/X5670 mod/version https://sourceforge.net/projects/math-atlas/files/Stable/ 3.10.3
./atompaw/4.0.0.13/intel-14.0.3 mod/version http://users.wfu.edu/natalie/papers/pwpaw/man.html 4.1.1.0
./autoconf/2.69 mod/version https://ftp.gnu.org/gnu/autoconf/ 2.71
./BerkeleyGW/1.2.8/intel-14.0.3 mod/version
./BerkeleyGW/2.1/intel mod/version https://berkeleygw.org/download/ 2.1
./bigdft/1.7.5/intel-13.1.0 mod/version https://launchpad.net/bigdft/+download 1.8.3
./boost/boost-1.60.0/gcc-4.9.1 mod/version
./boost/boost-1.60.0/intel-16.0.1 mod/version
./boost/boost-1.65.1/gcc-5.2.1 mod/version
./boost/boost-1.65.1/intel-17.0.4 mod/version https://www.boost.org/users/download/ 1.75.0
./bzip2/1.0.6 mod/version
./bzip2/1.0.8 mod/version 3.11.10
./cassandra/apache-cassandra-3.11.6 mod/version https://cassandra.apache.org/download/ unknown
./charm++/charm-6.3.2-mvapich-intel/mpi-linux-x86_64-ifort-mpicxx mod/version
./charm++/charm-6.3.2-openmpi-intel/mpi-linux-x86_64-ifort-mpicxx mod/version http://charmplusplus.org/download/ 6.10.2
./cistem/cistem-1.0.0-beta mod/version https://cistem.org/ 1.0.0-beta
./cmake/cmake-2.8.11 mod/version
./cmake/cmake-3.3.2 mod/version
./cmake/cmake-3.5.2 cmake/3.5.2
./cmake/cmake-3.13.3 cmake/3.13.3 https://cmake.org/download/ 3.19.4
./comsol/54 mod/version
./comsol/55 mod/version
./comsol/56 mod/version
./comsol/comsol53a mod/version commercial
./coreutils/8.32 mod/version
./cplex/12.10.0 mod/version
./cplex/cplex-12.6.3 mod/version
./cplex/cplex-12.8.0 mod/version commercial
./CPMD mod/version https://www.cpmd.org/wordpress/ unknown/licensed
./cuda/cublasgemm-benchmark mod/version
./cuda/cudnn-8.0-v6.0 mod/version
./cuda/gdk mod/version
./cuda/libgpuarray mod/version
./cuda/mixbench mod/version
./cuda/nvhpc_2020_207_Linux_x86_64_cuda_11.0 nvhpc/20.7
./cuda/NVIDIA_GPU_Computing_SDK mod/version
./cuda/cuda-7.5 cuda/7.5
./cuda/cuda-8.0 cuda/8.0
./cuda/cuda-8.0.61 cuda/8.0.61
./cuda/cuda-9.0 cuda/9.0
./cuda/cuda-9.1 mod/version
./cuda/local/9.1 mod/version
./cuda/cuda-9.2 cuda/9.2
./cuda/cuda-10.1 cuda/10.1
./cuda/10.2 cuda/10.2
./cuda/11.1 cuda/11.1 nvidia
./curl/7.50.0 mod/version
./curl/7.53.1 mod/version
./curl/7.60.0 curl/7.60.1
./curl/7.69.1 curl/7.69.1 https://curl.se/download.html 7.75.0
./dar/2.4.17 mod/version
./dar/dar-2.4.17 mod/version
./ddscat/ddscat-7.3.0 mod/version
./dl_poly/4.0.5 mod/version https://www.scd.stfc.ac.uk/Pages/DL_POLY.aspx 4.10.0
./eigen/3.3.2 mod/version
./eigen/3.3.5/gcc mod/version
./eigen/3.3.5/intel mod/version
./eigen/3.3.9/gcc mod/version
./eigen/3.3.9/intel mod/version http://eigen.tuxfamily.org/index.php?title=Main_Page 3.3.9
./einspline mod/version https://sourceforge.net/projects/einspline/files/ 0.9.2
./elk/elk-3.3.15 mod/version https://sourceforge.net/projects/elk/files/ 7.0.12
./elmer elmer/1.0 http://www.elmerfem.org/blog/binaries/ 8.4
./elpa-2016.05.004/intel-mkl-impi/sse2 mod/version
./elpa/elpa-2016.05.004/intel-mkl-impi mod/version
./elpa/elpa-2016.11.001/intel-mkl-impi mod/version https://gitlab.mpcdf.mpg.de/elpa/elpa 2020.11.00.1
./espresso/5.4.0-intel-14.0.3-mkl-14.0.3-fftw-3.3.4-impi-5.1.2 mod/version
./espresso/5.4.0-intel-mkl-impi mod/version
./espresso/qe-6.1-intel-mkl-impi mod/version
./espresso/espresso-6.5-intel-impi-mkl mod/version
./espresso/espresso-6.5-intel-impi-mkl-trestles mod/version
./espresso/espresso-6.6-intel-impi-mkl-pinnacle mod/version
./espresso/espresso-6.6-intel-impi-mkl-trestles mod/version https://github.com/QEF/q-e/releases 6.7
./etsf_io/1.0.4 mod/version
./FEBio/2.8.6 mod/version https://github.com/febiosoftware/FEBio 3.2
./ffmpeg/3.3.1 mod/version https://ffmpeg.org/index.html#news 4.2
./fftw/fftw-2.1.5-single mod/version
./fftw/fftw-2.1.5-single/gcc-4.5.0 mod/version
./fftw/fftw-2.1.5-single/intel-13.1.0 mod/version
./fftw/fftw-3.3.4-double-avx-openmp mod/version
./fftw/fftw-3.3.4-double-avx-openmp/intel-14.0.3 mod/version
./fftw/fftw-3.3.4-double-sse2 mod/version
./fftw/fftw-3.3.4-double-sse2/gcc-4.9.1 mod/version
./fftw/fftw-3.3.4-double-sse2/intel-14.0.3 mod/version
./fftw/3.3.6 mod/version
./fftw/3.3.6/gcc mod/version
./fftw/3.3.6/intel mod/version
./fftw/3.3.8/gcc mod/version
./fftw/3.3.8/impi mod/version
./fftw/3.3.8/intel mod/version
./fftw/3.3.8/openmpi mod/version http://www.fftw.org/download.html 3.3.9
./fluidix mod/version https://www.fluidix.ca/download.html 1.0.5
./fn/0.6.1 mod/version https://github.com/fnproject/fn 0.3.25
./galamost/3.1.0 mod/version
./galamost/3.1.0-old mod/version
./galamost/3.1.0-single-cc35 mod/version
./galamost/3.1.0-tyh mod/version
./galamost/galamost-3.1.0 mod/version https://web.archive.org/web/20190511100808/http://galamost.ciac.jl.cn/ 3.1.1
./galaxy15/15.40 galaxy/15.40 http://www.physics.rutgers.edu/galaxy/ 15.4
./gamess; gamess/5.1.2012
./ganglia/3.7.2 mod/version
./gappa/1.3.5/gcc mod/version http://gappa.gforge.inria.fr/ 1.3.5
./Gaussian/intel mod/version
./Gaussian/pgi mod/version
./Gaussian/pgi2 mod/version
./Gaussian/pgi3 mod/version
./gcc/devtoolset-3 mod/version deprecated
./gd/2.2.2 gd/2.2.2 https://libgd.github.io/ 2.3.1
./gdal/2.2.4 gdal/2.2.4 http://download.osgeo.org/gdal/ 3.2.1
./gdrcopy/1.4 mod/version https://github.com/NVIDIA/gdrcopy 2.1
./geos/geos-3.6.2 mod/version
./geos/3.6.2 mod/version https://download.osgeo.org/geos/ 3.9.0
./git/2.28.0 mod/version
./glibc/2.14 mod/version deprecated
./glpk/4.55 glpk/4.55 https://ftp.gnu.org/gnu/glpk/ 5.0
./gmp/6.1.0 mod/version
./gmp/6.1.2/gcc gmp/6.1.2 https://gmplib.org/ 6.2.1
./gnuplot/5.0.4 mod/version
./gnuplot/5.2.0 mod/version
./go/1.14.4 mod/version https://golang.org/dl/ 1.15.8
./gotoblas2/dynamic/3.20GHz mod/1.09
./gotoblas2/dynamic/6174 gotoblas2/1.09
./gotoblas2/dynamic/E5430 gotoblas2/1.09
./gotoblas2/dynamic/E5520 gotoblas2/1.09
./gotoblas2/dynamic/X5670 gotoblas2/1.09
./gotoblas2/static/6174 gotoblas2/1.09-static
./gotoblas2/static/E5430 gotoblas2/1.09-static https://www.tacc.utexas.edu/research-development/tacc-software/gotoblas2 1.13/deprecated-to-openblas
./gromacs/4.5.7/intel mod/version
./gromacs/4.6.7/double-nogpu mod/version
./gromacs/4.6.7/single-nogpu gromacs/4.6.7
./gromacs/5.1.0-single-nogpu mod/version
./gromacs/5.1.0-single-nogpu/intel-14.0.3 mod/version
./gromacs/5.1.2.0-double-nogpu mod/version
./gromacs/5.1.2.0-double-nogpu/intel-14.0.3 mod/version
./gromacs/5.1.2.0-single-nogpu mod/version
./gromacs/5.1.2.0-single-nogpu/intel-14.0.3 mod/version
./gromacs/5.1.2-double-nogpu mod/version
./gromacs/5.1.2-double-nogpu/intel-14.0.3 mod/version
./gromacs/5.1.2-single-nogpu mod/version
./gromacs/5.1.2-single-nogpu/intel-14.0.3 mod/version
./gromacs/5.2.1-single-gpu mod/version
./gromacs/ls-2016.3/intel mod/version
./gromacs/2016.3/gcc mod/2016.3
./gromacs/2016.3/gcc-gpu mod/2016.3
./gromacs/2016.3/intel mod/version
./gromacs/2019.3/gnu gromacs/2019.3
./gromacs/2019.3/intel gromacs/2019.3
./gromacs/2019.3/nogpu mod/version
./gromacs/2020.2/intel mod/version https://manual.gromacs.org/documentation/2021/download.html 2021
./gsl/gsl-1.14 mod/version
./gsl/gsl-1.14-gcc-4.1.2 mod/version
./gsl/gsl-1.14/gcc-4.1.2 mod/version
./gsl/gsl-1.15-gcc-4.5.0 mod/version
./gsl/gsl-1.16-intel-13.1.0-mkl mod/version
./gsl/2.3-intel-mkl-14.0.3 mod/version
./gsl/2.4/gcc mod/version
./gsl/2.4/intel mod/version https://ftp.gnu.org/gnu/gsl/ 2.6
./gtest mod/version https://github.com/google/googletest 1.10.0
./gurobi/gurobi550 mod/version
./gurobi/gurobi605 mod/version
./gurobi/gurobi650 mod/version
./gurobi/gurobi752 mod/version
./gurobi/gurobi801 mod/version
./gurobi/gurobi910 mod/version https://www.gurobi.com/products/gurobi-optimizer/ 9.1
./hadoop/hadoop-2.10.0 hadoop/2.10.0 https://hadoop.apache.org/release/ 3.2.1
./hdf5/1.8.18/gcc-4.9.1 mod/version
./hdf5/1.8.18/intel-14.0.3 mod/version
./hdf5/1.8.18/intel-17.0.4 mod/version
./hdf5/1.8.19-bak mod/version
./hdf5/1.8.19/gcc-4.9.1 mod/version
./hdf5/1.8.19/gcc-5.2.1 mod/version
./hdf5/1.8.19/openmpi-1.8.8 mod/version
./hdf5/1.8.19/openmpi-2.1.2 mod/version
./hdf5/1.8.19-serial+openmpi mod/version
./hdf5/1.8.19-serial+openmpi/gcc-5.2.1 mod/version
./hdf5/1.8.20/gcc-6.3.1 mod/version
./hdf5/1.10.0-patch1 mod/version
./hdf5/1.10.0-patch1-x86_64-gcc447 mod/version
./hdf5/1.10.4 mod/version
./hdf5/1.10.5/gcc hdf5/1.10.5
./hdf5/1.10.5/intel hdf5/1.10.5
./hdf5/1.12.0/gcc hdf5/1.12.0
./hdf5/1.12.0/intel hdf5/1.12.0 https://www.hdfgroup.org/downloads/hdf5/source-code/ 1.12.0
./hemelb/0.7 mod/version https://github.com/hemelb-codes/hemelb ?2021
./HFSS/HFSS15.0.5 mod/version ansys
./hpc_sdk/20.7 mod/version https://developer.nvidia.com/nvidia-hpc-sdk-downloads 22.1
./hpctoolkit/hpctoolkit mod/version https://github.com/HPCToolkit/hpctoolkit 2020.08
./hpc/2.8.0 deprecated_copy_of_hpcx/2.8.0
./hpcx/2.4.1.0 hpcx/openmpi-mt-2.4 2.8.0
./hpcx/2.8.0 hpcx/openmpi-mt-2.8 2.8.0
./hwloc/1.6.1 mod/version
./hwloc/1.7.2 mod/version
./hwloc/2.0.2 mod/version https://www.open-mpi.org/projects/hwloc/ 2.4.0
./hypre/11.1/intel-16.0.1 mod/version https://github.com/hypre-space/hypre ?2021
./idl/8.7.2 mod/version
./iftop/0.17 mod/version
./imp/2.13.0 mod/version https://integrativemodeling.org/download.html 2.14.0
./intel18/compilers_and_libraries_2018.1.163 mod/version
./intel18/compilers_and_libraries_2018.2.199 mod/version
./intel18/parallel_studio_xe_2018.1.038/bin mod/version
./intel18/parallel_studio_xe_2018.2.046 mod/version
./intel/compilers_and_libraries_2016.1.150 mod/version
./intel/compilers_and_libraries_2020.0.166 mod/version
./intel/composer_xe_2013_sp1.3.174 mod/version
./intel/intelpython3 mod/version
./intel/parallel_studio_xe_2017_update4 mod/version
./intel/parallel_studio_xe_2017_update7 mod/version
./intel/parallel_studio_xe_2019_update_4 mod/version
./intel/parallel_studio_xe_2020.0.088 mod/version commercial
./JAGS/4.1.0 mod/version http://mcmc-jags.sourceforge.net/ 4.3.0
./java/ibm mod/version
./java/jdk-14.0.1 mod/version
./java/jdk1.7.0_80 mod/version
./java/jdk1.8.0_112 mod/version
./java/jdk1.8.0_202 mod/version
./java/jdk1.8.0_72 mod/version
./java/jdk1.8.0_92 mod/version commercial
./jeigen mod/version https://github.com/hughperkins/jeigen 1.2-2016
./jna mod/version https://github.com/java-native-access/jna continuous
./julia/julia-1.1.1 mod/version https://github.com/JuliaLang/julia 1.5.3
./kafka/kafka_2.12-2.4.0 mod/version https://kafka.apache.org/downloads 2.7.0
./knem/1.1.3/gcc mod/version
./knem/1.1.3/intel mod/version https://knem.gitlabpages.inria.fr/download/ 1.1.4
./lammps/lammps-1Feb14 mod/version
./lammps/lammps-30Jul16 mod/version
./lammps/lammps-31Mar17 mod/version
./lammps/lammps-16Mar18 mod/version
./lammps/lammps-29Mar19 mod/version
./lammps/lammps-24May19 mod/version
./lammps/lammps-28Jan19 mod/version
./lammps/lammps-20190807 mod/version
./lammps/lammps-20191203 mod/version
./lammps/lammps-3Mar20 mod/version
./lammps/lammps-3Mar20b mod/version
./lammps/lammps-3Mar20c mod/version
./lammps/lammps-12Dec20 mod/version https://github.com/lammps/lammps continuous
./lammps/LIGGGHTS-PUBLIC(2016-05-27) mod/version https://github.com/srinath-chakravarthy/ligghts 3.8.0
./LIGGGHTS/3.2.0 mod/version
./LIGGGHTS/3.8.0/3.8.0 mod/version https://github.com/srinath-chakravarthy/ligghts 3.8.0
./lapack/lapack-3.2.1/gcc-4.5.0 mod/version
./lapack/lapack-3.2.1/intel-12.0.0 mod/version
./lapack/lapack-3.8.0/gcc-7.2.1 mod/version http://www.netlib.org/lapack/#_lapack_version_3_9_0 3.9.0
./libctl/3.2.2 mod/version http://jdj.mit.edu/wiki/index.php?title=Libctl&printable=yes 3.2.2
./libfabric/1.9.0rc1/psm mod/version https://github.com/ofiwg/libfabric/releases/ 1.11.2
./libtorch/1.71-cuda11.0 mod/version https://github.com/pytorch/pytorch/releases 1.7.1
./libxc/2.2.0 mod/version
./libxc/2.2.2 mod/version
./libxc/4.0.2/intel mod/version https://www.tddft.org/programs/libxc/download/ 5.1.0
./lmod/6.0.1 mod/version https://github.com/TACC/Lmod 8.4.20
./loos/2.2.4 mod/version https://osdn.net/projects/sfnet_loos/ 2.3.2
./magma/magma-2.1.0 mod/version https://icl.utk.edu/magma/software/index.html 2.5.4
./matlab/R2017a matlab/r2017a
./matlab/R2019a matlab/r2019a
./matlab/R2019b matlab/r2019b
./matlab/R2020b matlab/r2020b commercial
./mauiversions/el6/maui-3.3.1-torque-2.5.13a mod/version
./mauiversions/el6/maui-3.3.1-torque-2.5.13a-2 mod/version
./mauiversions/el6/maui-3.3.1-torque-2.5.4 mod/version
./mauiversions/maui-3.3.1-torque-2.5.12 mod/version
./mauiversions/maui-3.3.1-torque-2.5.13 mod/version
./mauiversions/maui-3.3.1-torque-2.5.13a mod/version
./mauiversions/maui-3.3.1-torque-2.5.4 mod/version
./maven/apache-maven-3.6.3 maven/3.6.3 https://maven.apache.org/download.cgi 3.6.3
./meep/1.3 meep/1.3 http://jdj.mit.edu/wiki/index.php?title=Meep_Download&printable=yes 1.3
./MKDAT mod/version http://metal.elte.hu/mwp/mkdat/ 20319
mkl/14.0.3 commercial
mkl/17.0.4 commercial
mkl/17.0.7 commercial
mkl/18.0.1 commercial
mkl/18.0.2 commercial
mkl/19.0.4 commercial
mkl/19.0.5 commercial
mkl/20.0.1 commercial
/mono/2.6.1 mono/2.6.1
./mono/3.10.0 mono/3.10.0 https://www.mono-project.com/download/stable/ 6.12.0
./moose(3.0.1) mod/version https://github.com/BhallaLab/moose 3.2.0
./mpc/mpc-1.0.3 mod/version https://ftp.gnu.org/gnu/mpc/ 1.2.1
./mpfr/mpfr-3.1.0 mod/version
./mpfr/4.0.2/gcc mod/version https://www.mpfr.org/mpfr-current/#download 4.1.0
./mpi/mvapich2-2.1/gcc-4.9.1 mvapich2/2.1
./mpi/mvapich2-2.1/intel-14.0.3 mvapich2/2.1
./mpi/mvapich2-2.1/intel-old mod/version
./mpi/mvapich2-2.2/gcc-18.0.1 mod/version
./mpi/mvapich2-2.2/gcc-4.9.1 mod/version
./mpi/mvapich2-2.2/gcc-6.3.1 mod/version
./mpi/mvapich2-2.2/intel-16.0.1 mod/version
./mpi/mvapich2-2.3.1/gcc-7.2.1 mod/version
./mpi/mvapich2-2.3.1/intel-18.0.1 mod/version
./mpi/mvapich2-2.3.2/gcc mvapich2/2.3.2
./mpi/mvapich2-2.3.2/intel mvapich2/2.3.2
./mpi/mvapich2-2.3.2/mellanox-trestles mod/version
./mpi/mvapich2-2.3.3/gcc mvapich2/2.3.3
./mpi/mvapich2-2.3.4/gcc mvapich2/2.3.4
./mpi/openmpi/1.3.3 mod/version
./mpi/openmpi-1.6.5/gcc-4.9.1 mod/version
./mpi/openmpi-1.8.6/gcc-4.9.1 openmpi/1.8.6
./mpi/openmpi-1.8.6/intel-14.0.3 openmpi/1.8.6
./mpi/openmpi-1.8.8/gcc-4.9.1 mod/version
./mpi/openmpi-1.8.8/gcc-5.2.1 mod/version
./mpi/openmpi-1.8.8/intel-14.0.3 mod/version
./mpi/openmpi-1.8.8-torque/gcc-7.2.1 mod/version
./mpi/openmpi-2.0.1/gcc-4.9.1 mod/version
./mpi/openmpi-2.0.1/intel-14.0.3 mod/version
./mpi/openmpi-2.0.4-torque mod/version
./mpi/openmpi-2.0.4-torque/gcc-7.2.1 mod/version
./mpi/openmpi-2.1.2/gcc-5.2.1 mod/version
./mpi/openmpi-2.1.2/intel-17.0.4 mod/version
./mpi/openmpi-3.0.3 mod/version
./mpi/openmpi-3.0.3/gcc mod/version
./mpi/openmpi-3.0.3/gcc-7.3.1 mod/version
./mpi/openmpi-3.0.3/intel mod/version
./mpi/openmpi-3.0.3/intel-18.0.2 mod/version
./mpi/openmpi-3.0.3/qcc-7.3.1 mod/version
./mpi/openmpi-3.0.3-torque/gcc-7.2.1 mod/version
./mpi/openmpi-3.1.4/gcc openmpi/3.1.4
./mpi/openmpi-3.1.4/intel openmpi/3.1.4
./mpi/openmpi-4.0.1/gcc openmpi/4.0.1
./mpi/openmpi-4.0.1/intel openmpi/4.0.1
./mpi/openmpi-4.0.2/gcc Zopenmpi4.0.2
./mpi/openmpi-4.0.4/gcc openmpi/4.0.4
./mpi/openmpi-4.1.0/gcc openmpi/4.1.0
./mpi/openmpi-4.1.0/mellanox mod/version
./msrsync mod/version https://github.com/jbd/msrsync 2019
./NAMD/namd-tutorial-files mod/version
./NAMD/namd-tutorial-files/1-3-box mod/version
./NAMD/plumed-2.0 mod/version
./NAMD/plumed-2.1b mod/version
./NAMD/NAMD2.7 mod/version
./NAMD/NAMD2.7/charm-6.2.2 mod/version
./NAMD/NAMD2.7/Linux-x86_64-icc mod/version
./NAMD/NAMD2.8 mod/version
./NAMD/NAMD2.8-PLUMED mod/version
./NAMD/2.9-gcc-openmpi-noplumed mod/version
./NAMD/2.9-gcc-openmpi-plumed-2.1b mod/version
./NAMD/2.9-intel-openmpi mod/version
./NAMD/intel-openmpi-2.9 mod/version
./NAMD/NAMD_2.10_Linux-x86_64-ibverbs-smp mod/version
./NAMD/intel-openmpi-2.10 mod/version
./NAMD/NAMD_2.11_Linux-x86_64-ibverbs-smp mod/version
./NAMD/NAMD_2.11_Linux-x86_64-verbs mod/version
./NAMD/NAMD_2.11_Linux-x86_64-verbs-smp mod/version
./NAMD/NAMD_2.11_Source mod/version
./NAMD/NAMD_2.12_Linux-x86_64-ibverbs-smp mod/version
./NAMD/NAMD_2.12_Linux-x86_64-multicore mod/version
./NAMD/NAMD_2.12_Linux-x86_64-verbs-smp mod/version
./NAMD/NAMD_2.12_Source mod/version
./NAMD/NAMD_2.13_Linux-x86_64-ibverbs-smp mod/version
./NAMD/NAMD_2.13_Linux-x86_64-ibverbs-smp-CUDA mod/version
./NAMD/NAMD_2.13_Linux-x86_64-multicore mod/version
./NAMD/NAMD_2.13_Linux-x86_64-multicore-CUDA mod/version
./NAMD/NAMD_2.13_Linux-x86_64-verbs-smp mod/version
./NAMD/NAMD_2.13_Linux-x86_64-verbs-smp-CUDA mod/version
./NAMD/NAMD_2.14_Linux-x86_64-verbs-smp mod/version
./NAMD/NAMD_2.14_Linux-x86_64-verbs-smp-CUDA mod/version https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD 2.14-stable
./NAMD/NAMD_2.15a1_Linux-x86_64-multicore-HIP mod/version
./NAMD/NAMD_2.15alpha1_Linux-x86_64-multicore-AVX512 mod/version
./NAMD/NAMD_3.0alpha7_Linux-x86_64-multicore-CUDA mod/version
./ncarg/6.2.1-gcc-4.7.2 ncl/6.2.1
./ncl/6.3.0 ncl/6.3.0 https://www.ncl.ucar.edu/Download/ 6.6.3
./netcdf/4.4.1.1/intel-14.0.3 netcdf/4.4.1.1
./netcdf/4.4.1.1/intel-17.0.4 netcdf/4.4.1.1
./netcdf/4.4.4 mod/version
./netcdf/4.5.0/intel netcdf/4.5.0
./netcdf/4.5.0/intel-17.0.4 mod/version
./netcdf/c-4.7.4/gcc mod/version https://www.unidata.ucar.edu/downloads/netcdf/ 4.7.3-4.5.4
./netcdf/c-4.7.4/intel mod/version https://www.unidata.ucar.edu/downloads/netcdf/ 4.7.3-4.5.4
./netcdf/fortran-4.5.3/intel mod/version https://www.unidata.ucar.edu/downloads/netcdf/ 4.7.3-4.5.4
./nettop mod/version
./nlopt/2.5.0 mod/version https://github.com/stevengj/nlopt 2.7.0
./NWChem/6.1.1 nwchem/6.1.1 https://www.nwchem-sw.org/index-php/Download.html 6.8
./OpenBLAS/noomp mod/version
./OpenBLAS/omp mod/version https://github.com/xianyi/OpenBLAS 0.3.13
./opencv/3.2.0 mod/version https://opencv.org/releases/ 4.5.1
./OpenFOAM-7 mod/version deprecated
./OpenFOAM/OpenFOAM-7 mod/version
./OpenFOAM/ThirdParty-7 mod/version
./OpenFOAM/OpenFOAM-8 mod/version https://openfoam.org/download/ 8
./OpenFOAM/ThirdParty-8 mod/version
./openmpi mod/version deprecated
./Oracle mod/version ee-19c
./orca/orca_3_0_3_linux_x86-64 orca/3.0.3
./orca/orca_4_0_1_2_linux_x86-64_openmpi202 orca/4.1.2 https://orcaforum.kofo.mpg.de/app.php/portal 4.2.1
./osu-micro-bench/5.5 mod/version
./ovito/ovito-2.6.1 mod/version
./ovito/ovito-2.9.0-x86_64 mod/version https://www.ovito.org/linux-downloads/ 3.4.1
./parallel/20160422 parallel/20160422
./parallel/20160622 parallel/20160622
./parallel/20200322 parallel/20200322
./pathscale/ekopath-5.0.5 pathscale/5.0.5 deprecated
./pcre/2-10.23 mod/version https://www.pcre.org/ pcre2-10.36
./pcre/8.39 mod/version
./pcre/8.39b mod/version https://www.pcre.org/ pcre1-8.44
./perl5 perl/5
./perl/perl-5.24.0 perl/5.24.0
./petsc/gcc-4.9.1 mod/version
./petsc/3.7.2-intel-16.0.1-impi-5.1.2 mod/version
./petsc/3.10.5/gcc-openmpi-cuda-mkl mod/version
./petsc/3.10.5/gcc-openmpi-mkl mod/version
./petsc/3.10.5/gcc-openmpi-mkl-avx512 mod/version
./petsc/3.11.3/gcc mod/version
./petsc/3.11.3/gcc-impi-mkl mod/version
./petsc/3.11.3/gcc-openmpi mod/version
./petsc/3.11.3/gcc-openmpi-mkl mod/version
./petsc/3.11.3/intel mod/version
./petsc/3.14.2/gcc mod/version https://www.mcs.anl.gov/petsc/download/index.html 3.14.4
./PGI/linux86-64/2016 mod/version
./PGI/linux86-64/16.3 mod/version
./PGI/linux86-64/16.5 mod/version
./PGI/2016-5 mod/version
./PGI/2017-174 mod/version
./PGI/2018-1810 mod/version
./PGI/2018-184 mod/version
./PGI/2019-194 mod/version https://www.pgroup.com/support/release_archive.php 2020
./phonopy/phonopy-1.6.2 mod/version
./phonopy/phonopy-1.9.4 mod/version
./phonopy/2.7.15 mod/version https://phonopy.github.io/phonopy/ 2.9.1
./photoscan-pro/1.2.6 mod/version https://www.agisoft.com/downloads/installer/ 1.7.1
./pigz-2.4 mod/version https://zlib.net/pigz/ 2.6
./platform_mpi mod/version https://epwt-www.mybluemix.net/software/support/trial/cst/welcomepage.wss?siteId=749 10.4/openmpi4.0
./plumed/2.3b/intel mod/version https://www.plumed.org/download 2.7.0
./pnetcdf/1.9.0/gnu-impi mod/version
./pnetcdf/1.9.0/intel-impi mod/version https://parallel-netcdf.github.io/ 1.12.2
./PQS/4.0-8-old mod/version
./PQS/4.0-8 pqs/4.0-8
./PQS/4.1-0 pqs/4.1-0
./proj/4.7.1 mod/version
./proj/5.0.1 proj/5.0.1 https://proj.org/download.html 7.2.1
./pvm3 pvm/3.4.6
./python/2.7.3 mod/version
./python/2.7.5 mod/version
./python/2.7.9 mod/version
./python/2.7.11 mod/version
./python/2.7.15 mod/version
./python/Python-2.7.15 mod/version
./python/2.7.15b mod/version https://www.python.org/downloads/release/python-2718/ 2.7.18-final
./python/3.5.1 mod/version
./python/3.6.0 mod/version
./python/anaconda2-2.7.13 mod/version
./python/anaconda2-2.7.15 mod/version
./python/anaconda2-2.7.16 mod/version
./python/anaconda2-2.7.18 mod/version
./python/anaconda2-2.7.18/plugins mod/version
./python/anaconda3-3.6.0 mod/version
./python/anaconda3-python-3.7.3 mod/version
./qbox-1.63.5 qbox/1.63.5 http://qboxcode.org/download/ 1.63.5
./qmcpack/qmcpack_rev6406_20141208 qmcpack/rev6406 https://github.com/QMCPACK/qmcpack 3.10.0
./Qt/5.7.1 mod/version
./qt/5.10.0 mod/version
./qt/qt5-build mod/version
./Qt/5.11.3 mod/version https://code.qt.io/cgit/qt/qt5.git/ 5.12
./QTXNetwork_RHEL6.5 mod/version http://ibi.zju.edu.cn/software/QTXNetwork/ 1.0-2014
./R/centos6/R-4.0.2 mod/version
./R/MicrosoftR-3.4.2 mod/version
./R/Microsoft-R/microsoft-r mod/version
./R/microsoft-r-open mod/version
./R/R-3.3.2/intel-16.0.1 mod/version
./R/R-3.4.3 mod/version
./R/R-3.4.3/6.3.1 mod/version
./R/R-3.4.4/gcc-6.3.1 mod/version
./R/R-3.6.1 mod/version
./R/R-4.0.2 mod/version
./R/4.0.2 mod/version https://www.r-project.org/ 4.0.3
./R/rstudio/rstudio-1.2.1335 mod/version https://rstudio.com/products/rstudio/download/#download 1.4.1103
./relion/3.0-tiff-gpu relion/3.0-tiff-gpu https://github.com/3dem/relion 3.1.1
./rh6 mod/version
./SageMath(8.8) mod/version
./sage/sage-9.0 mod/version
./sage/9.0 mod/version https://www.sagemath.org/ 9.2
./SAS/9.4M6 mod/version
./sedatools mod/version https://github.com/ProgrammeVitam/sedatools 2.4.1-202007
./SGSE_linux mod/version https://sonamine.zendesk.com/hc/en-us/articles/212762766-Sonamine-SGSE-2-0-released-in-April-2010
./ShengBTE/2017-04-03/intel mod/version http://www.shengbte.org/downloads 1.1.1-20170403
./siesta/siesta-benchmark mod/version
./siesta/siesta-trunk-462 mod/version
./siesta/siesta-3.2 mod/version
./siesta/siesta-3.2-pl-5 mod/version
./siesta/siesta-3.2-pl-5-0 mod/version
./siesta/siesta-3.2-pl-5-1 mod/version
./siesta/siesta-3.2-pl-5d mod/version
./siesta/siesta-4.0 mod/version https://gitlab.com/siesta-project/siesta/-/branches 4.1
./singularity/images/development mod/version
./singularity/images/nvidia-pytorch-19.09-py3 mod/version
./singularity/images/parabricks parabricks/2.5.0
./singularity/images/PRISTINE mod/version
./singularity/2.3.1 mod/version
./singularity/2.4 singularity/2.4
./singularity/2.5.2 singularity/2.5.2
./singularity/3.2.1 singularity/3.2.1
./singularity/3.5.3 singularity/3.5.3
./singularity/3.6.3 singularity/3.6.3
./singularity/3.6.4 singularity/3.6.4 https://sylabs.io/docs/ 3.7.0
./smartmontools/6.5 mod/version https://www.smartmontools.org/wiki/Download 7.2
./smrtlink/smrtlink mod/version ? should_be_bio
./spark/sbt-1.3.7 mod/version
./spark/spark-1.6.1-bin-hadoop2.6 mod/version
./spark/spark-2.3.0-bin-hadoop2.7 mod/version
./spark/spark-2.4.4-bin-hadoop2.7 mod/version https://spark.apache.org/downloads.html 3.0.1
./sparsehash/sparsehash-master mod/version
./sparsehash/intel-16.0.1 mod/version
./sparsehash/2.3/intel mod/version https://github.com/sparsehash/sparsehash 2.0.4
./spglib/1.10.4/gcc mod/version
./spglib/1.10.4/intel mod/version
./spglib/1.13/intel mod/version https://pypi.org/project/spglib/ 1.16.1
./spirit mod/version
./stream mod/version
./SuiteSparse/5.8.1/gcc mod/version https://github.com/DrTimothyAldenDavis/SuiteSparse 5.8.1
./SWAT mod/version
./swig/3.0.10 mod/version should_be_bio
./SYMPHONY symphony/v5.3.3
./synopsys/sentaurus/M_2016.12-SP2 mod/version https://www.synopsys.com/support/licensing-installation-computeplatforms/installation.html 2020.12
./szip/2.1/gcc mod/version
./szip/2.1/intel-14.0.3 mod/version
./szip/2.1/intel-16.0.1 mod/version https://support.hdfgroup.org/ftp/lib-external/szip/2.1.1/src/ 2.1.1
./tcl/8.5.18 mod/version https://www.tcl.tk/software/tcltk/download.html 8.6.11
./texinfo/3.7 mod/version
./texinfo/6.7 mod/version
./thirdorder(20190205) mod/version http://www.shengbte.org/downloads (2018)1.1.0
./torqueversions/el6/torque-2.5.13a mod/version
./torqueversions/el6/torque-2.5.4 mod/version
./torqueversions/el6/torque-el5-2.4.16b mod/version
./torqueversions/el6/torque-el6-2.4.16b mod/version
./torqueversions/el7/torque-2.4.16b mod/version
./torqueversions/el7/torque-2.5.13a mod/version
./torqueversions/torque-2.5.12 mod/version
./torqueversions/torque-2.5.13 mod/version
./torqueversions/torque-2.5.13a mod/version
./torqueversions/torque-el5-2.4.16b mod/version
./torqueversions/torque-el5-2.5.4 mod/version
./torqueversions/torque-el6-2.4.16b mod/version
./trilinos/11.0.3 trilinos/11.0.3 https://github.com/trilinos/Trilinos/releases 13.0.1
./ucx/1.4.0 mod/version
./ucx/1.6.0/gcc mod/version
./ucx/1.6.0/intel mod/version
./ucx/1.6.0/pinnacle mod/version
./ucx/1.6.1 mod/version
./ucx/1.6.1/gcc mod/version
./ucx/1.8.0/gcc mod/version https://github.com/openucx/ucx 1.9.0
./ucx-1.9.0-centos7-mofed5.0-1.0.0.0-cuda11.0 rpm https://github.com/openucx/ucx 1.9.0
./UQTk/3.1.0 mod/version https://github.com/sandialabs/UQTk 3.1.0
./vasp/vasp.5.2 mod/version
./vasp/vasp533 mod/version
./vasp/vasp533a mod/version
./vasp/vasp533b mod/version
./vasp/vasp533c mod/version
./vasp/535 mod/version
./vasp/vasp-5.4.4 mod/version
./vasp/vasp-5.4.4/vasp.5.4.4 mod/version
./velvet-1.2.10 mod/version should_be_bio
./VirtualGL/2.5.2-1 VirtualGL/2.5.2-1 https://sourceforge.net/projects/virtualgl/ 2.6.5
./visit visit/2.5.2
./vmd/1.9.3/vmd-1.9.2beta1 mod/version
./vmd/1.9.3/vmd-1.9.3 mod/version https://ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD 1.9.4
./v_sim/3.7.2 mod/version https://gitlab.com/l_sim/v_sim 2020
./wannier90/2.0.1/intel-14.0.3 mod/version http://www.wannier.org/download/ 3.1.0
./wien2k/18.2 wien2k/18.2
./WIEN2k_16.1 wien2k/16.1
./WIEN2k/19.1 wien2k/19.1
./WIEN2k/19.2el6 mod/version
./WIEN2k/19.2el7 wien2k/19.2 http://www.wien2k.at/ 19.2
./Wolfram/Mathematica/12.0 mod/version
./xcrysden/share/xcrysden-1.5.60 xcrysden/1.5.60 http://www.xcrysden.org/Download.html 1.6
./xerces-s mod/version https://xerces.apache.org/xerces-c/download.cgi 3.2.3
./xg/XGraph4.38_linux64 mod/version http://www.xgraph.org/linux/index.html 4.38
./xsede/0.0.8.0 mod/version
./xsede/0.1.0 mod/version
./xsede/0.2.0 mod/version
./xsede/1.0.0 mod/version
./xz/5.2.2 mod/version
./xz/5.2.3 mod/version
./xz/5.2.5 mod/version https://tukaani.org/xz/ 5.25
./yaml mod/version https://github.com/yaml/libyaml 0.2.5
./zlib/1.2.5 mod/version
./zlib/1.2.11/intel mod/version https://zlib.net/ 1.2.11
./zookeeper/apache-zookeeper-3.6.0-bin zookeeper/3.6.0 https://zookeeper.apache.org/
non_bioinformatics_catalog.txt · Last modified: 2021/02/19 17:37 (external edit)

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